Publications

@article{ridoskova:hal-04879845,

title = {Enhancing the prediction of arsenic bioavailability in soils with the diffusive gradient in thin film technique},

author = {Andrea Ridošková and Aurélie Pelfrêne and Pavlína Pelcová and Christophe Waterlot and Denisa Holasová and Michal Morávek},

url = {https://hal.science/hal-04879845},

doi = {10.1016/j.chemosphere.2024.144015},

year  = {2025},

date = {2025-02-01},

urldate = {2025-02-01},

journal = {Chemosphere},

volume = {371},

pages = {144015},

publisher = {Elsevier},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{oforiagyemang:hal-04362740,

title = {Plant testing with hemp and miscanthus to assess phytomanagement options including biostimulants and mycorrhizae on a metal-contaminated soil to provide biomass for sustainable biofuel production},

author = {Felix Ofori-Agyemang and Christophe Waterlot and James Manu and Roman Laloge and Romain Francin and Eleni Papazoglou and Efthymia Alexopoulou and Anissa Lounès-Hadj Sahraoui and Benoît Tisserant and Michel Mench and Aritz Burges and Nadège Oustrière},

url = {https://hal.science/hal-04362740},

doi = {10.1016/j.scitotenv.2023.169527},

year  = {2024},

date = {2024-02-01},

urldate = {2024-02-01},

journal = {Science of the Total Environment},

volume = {912},

pages = {169527},

publisher = {Elsevier},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{waterlot:hal-04403673,

title = {Sustainable pathways to oxicams via heterogeneous biosourced catalysts - Recyclable and reusable materials},

author = {Christophe Waterlot and Alina Ghinet and Pierrick Dufrénoy and Marie Hechelski and Adam Daïch and Damien Betrancourt and David Bulteel},

url = {https://hal.science/hal-04403673},

doi = {10.1016/j.jclepro.2024.140684},

year  = {2024},

date = {2024-01-01},

urldate = {2024-01-01},

journal = {Journal of Cleaner Production},

pages = {140684},

publisher = {Elsevier},

note = {ACL},

keywords = {ER2, ER4},

pubstate = {published},

tppubtype = {article}

}

@article{oforiagyemang:hal-04619295,

title = {Phytomanagement of a metal-contaminated agricultural soil with Sorghum bicolor, humic / fulvic acids and arbuscular mycorrhizal fungi near the former Pb/Zn metaleurop Nord smelter},

author = {Felix Ofori-Agyemang and Aritz Burges and Christophe Waterlot and Anissa Lounès andHadj Sahraoui and Benoît Tisserant and Michel Mench and Nadège Oustrière},

url = {https://hal.science/hal-04619295},

doi = {10.1016/j.chemosphere.2024.142624},

year  = {2024},

date = {2024-08-01},

urldate = {2024-08-01},

journal = {Chemosphere},

volume = {362},

pages = {142624},

publisher = {Elsevier},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{wakim:hal-04595489,

title = {Detection of 13 emerging soil pollutant compounds using a dual extraction method (QuEChERS and solid phase extraction) and a liquid chromatography/mass spectrometry LC-MS/MS method},

author = {Lara Maria Wakim and Amandine Descat and Florent Occelli and Annabelle Deram and Jean-François Goossens},

url = {https://hal.science/hal-04595489},

doi = {10.1016/j.mex.2024.102771},

year  = {2024},

date = {2024-06-01},

urldate = {2024-06-01},

journal = {MethodsX},

volume = {12},

pages = {102771},

publisher = {Elsevier},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{oconnor:hal-04633831,

title = {Young trees share soil water with wheat in an alley-cropping system in a wet crop year: Evidence from 2H2O artificial labeling},

author = {Claire O'Connor and Caroline Choma and Aichatou Ndiaye and François Delbende and Bernhard Zeller and Eric Manouvrier and Hélène Desmyttère and Ali Siah and Christophe Waterlot and Kasaina Sitraka Andrianarisoa},

url = {https://hal.science/hal-04633831},

doi = {10.1016/j.jhydrol.2024.131021},

year  = {2024},

date = {2024-05-01},

urldate = {2024-05-01},

journal = {Journal of Hydrology},

volume = {635},

pages = {131021},

publisher = {Elsevier},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{notteau:hal-04604569,

title = {Comment mieux conseiller les patients à l'officine afin de limiter les effets du changement climatique sur la santé ?},

author = {Cassandre Notteau and Stephan Gabet and Cécile-Marie Aliouat-Denis and Damien Cuny and Anne Garat},

url = {https://hal.univ-lille.fr/hal-04604569},

doi = {10.1016/j.actpha.2023.12.028},

year  = {2024},

date = {2024-03-01},

urldate = {2024-03-01},

journal = {Actualités Pharmaceutiques},

volume = {63},

number = {634},

pages = {17-21},

publisher = {Elsevier},

series = {Actualités Pharmaceutiques},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{oconnor:hal-04457985,

title = {Tree–wheat vertical fine root distribution in a 4-year-old temperate alley-cropping system},

author = {Claire O'Connor and Caroline Choma and François Delbende and Bernhard Zeller and Eric Manouvrier and Hélène Desmyttère and Ali Siah and Christophe Waterlot and Kasaina Sitraka Andrianarisoa},

url = {https://hal.science/hal-04457985},

doi = {10.1007/s10457-023-00945-w},

year  = {2024},

date = {2024-01-01},

urldate = {2024-01-01},

journal = {Agroforestry Systems},

publisher = {Springer Verlag},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{dealmeida:hal-04345329,

title = {Ants in restoration ecology: Why, what's and the way forward},

author = {Tania Almeida and Xavier Arnan and Yvan Capowiez and Mickael Hedde and Francois Mesleard and Thierry Dutoit and Olivier Blight},

url = {https://cnrs.hal.science/hal-04345329},

doi = {10.1002/ldr.5006},

year  = {2024},

date = {2024-01-01},

journal = {Land Degradation and Development},

volume = {35},

number = {4},

pages = {1284-1295},

publisher = {Wiley},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{wakim:hal-04595482,

title = {Unveiling the presence of endocrine disrupting chemicals in northern French soils: Land cover variability and implications},

author = {L. M. Wakim and F. Occelli and M. Paumelle and D. Brousmiche and L. Bouhadj and D. Cuny and A. Descat and C. Lanier and A. Deram},

url = {https://hal.science/hal-04595482},

doi = {10.1016/j.scitotenv.2023.169617},

year  = {2024},

date = {2024-02-01},

urldate = {2024-02-01},

journal = {Science of the Total Environment},

volume = {913},

pages = {169617},

publisher = {Elsevier},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{oconnor:hal-04458013,

title = {Early share of 15N-labelled fertilizer between trees and crop in young temperate alley-cropping system},

author = {Claire O'Connor and Bernhard Zeller and Caroline Choma and François Delbende and Eric Manouvrier and Hélène Desmyttère and Ali Siah and Christophe Waterlot and Kasaina Sitraka Andrianarisoa},

url = {https://hal.science/hal-04458013},

doi = {10.1016/j.eja.2023.127013},

year  = {2024},

date = {2024-01-01},

urldate = {2024-01-01},

journal = {European Journal of Agronomy},

volume = {152},

pages = {pp. 127013},

publisher = {Elsevier},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{varga:hal-04687674,

title = {Phylogenetic and morphological studies reveal large diversity and three new species in Amanita sect. Vaginatae (Agaricales, Basidiomycota) from Europe},

author = {Dóra Varga and Jean-Michel Hanss and Pierre-Arthur Moreau and Gábor Kovács and Bálint Dima},

url = {https://hal.science/hal-04687674},

doi = {10.1007/s11557-024-01974-0},

year  = {2024},

date = {2024-06-01},

urldate = {2024-06-01},

journal = {Mycological Progress},

volume = {23},

number = {1},

pages = {38},

publisher = {Springer Verlag},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{jairi:hal-04687711,

title = {Enhancing air pollution prediction: A neural transfer learning approach across different air pollutants},

author = {Idriss Jairi and Sarah Ben-Othman and Ludivine Canivet and Hayfa Zgaya-Biau},

url = {https://hal.science/hal-04687711},

doi = {10.1016/j.eti.2024.103793},

year  = {2024},

date = {2024-11-01},

urldate = {2024-11-01},

journal = {Environmental Technology and Innovation},

volume = {36},

pages = {103793},

publisher = {Elsevier},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{leconte:hal-04634440,

title = {Deciphering the mechanisms involved in reduced sensitivity to azoles and fengycin lipopeptide in Venturia inaequalis},

author = {Aline Leconte and Justine Jacquin and Matthieu Duban and Caroline Deweer and Pauline Trapet and Frédéric Laruelle and Amaury Farce and Philippe Compère and Karin Sahmer and Valentin Fiévet and Alexis Hoste and Ali Siah and Anissa Lounès-Hadj Sahraoui and Philippe Jacques and François Coutte and Magali Deleu and Jérôme Muchembled},

url = {https://hal.science/hal-04634440},

doi = {10.1016/j.micres.2024.127816},

year  = {2024},

date = {2024-09-01},

urldate = {2024-09-01},

journal = {Microbiological Research},

volume = {286},

pages = {127816},

publisher = {Elsevier},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{jairi:hal-04763860,

title = {Enhancing particulate matter risk assessment with novel machine learning-driven toxicity threshold prediction},

author = {Idriss Jairi and Amelle Rekbi and Sarah Ben-Othman and Slim Hammadi and Ludivine Canivet and Hayfa Zgaya-Biau},

url = {https://hal.science/hal-04763860},

doi = {10.1016/j.engappai.2024.109531},

year  = {2024},

date = {2024-10-01},

urldate = {2024-10-01},

journal = {Engineering Applications of Artificial Intelligence},

volume = {139},

pages = {109531},

publisher = {Elsevier},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{jairi:hal-04469637,

title = {Explainable based approach for the air quality classification on the granular computing rule extraction technique},

author = {Idriss Jairi and Sarah Ben-Othman and Ludivine Canivet and Hayfa Zgaya-Biau},

url = {https://hal.science/hal-04469637},

doi = {10.1016/j.engappai.2024.108096},

year  = {2024},

date = {2024-07-01},

urldate = {2024-07-01},

journal = {Engineering Applications of Artificial Intelligence},

volume = {133},

pages = {108096},

publisher = {Elsevier},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{safi:hal-04767976,

title = {Cu-promoted Access to 1,4-Diazine-Fused Isoindoles Through Concomitant C sp 3 –N and C sp 2 –N Bonds Formation Starting from Constrained N,O -acetals},

author = {Christine Safi and Mohamed Othman and Ata Martin Lawson and Ján Moncol and Hassan Oulyadi and Sergiu Shova and Christophe Waterlot and Alina Ghinet and Adam Daïch},

url = {https://hal.science/hal-04767976},

doi = {10.1002/adsc.202400343},

year  = {2024},

date = {2024-10-01},

urldate = {2024-10-01},

journal = {Advanced Synthesis and Catalysis},

publisher = {Wiley-VCH Verlag},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{cuvillierhot:hal-04882167,

title = {Urbanization Shifts Immunometabolism in a Common Bumblebee},

author = {Virginie Cuvillier-Hot and Alessandro Fisogni and Vincent Doublet and Sylvain Guillot and Anne-catherine Holl and Julie Leclercq-Dransart and Florent Occelli and Yves Piquot and Nina Hautekèete},

url = {https://hal.science/hal-04882167},

doi = {10.1002/ece3.70743},

year  = {2024},

date = {2024-12-01},

urldate = {2024-12-01},

journal = {Ecology and Evolution},

volume = {14},

number = {12},

publisher = {Wiley Open Access},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{Mench2023,

title = {Field assessment of organic amendments and spring barley to phytomanage 

	a Cu/PAH-contaminated soil},

author = {Michel Mench and Shahlla Matin and Wieslaw Szulc and Beata Rutkowska and Tomas Persson and Arne Sæbø and Aritz Burges and Nadège Oustriere},

year  = {2023},

date = {2023-01-01},

journal = {Environmental Geochemistry and Health},

volume = {152},

abstract = {The INTENSE project, supported by the EU Era-Net Facce Surplus, aimed at increasing crop production on marginal land, including those with contaminated soils. A field trial was set up at a former wood preservation site to phytomanage a Cu/PAH-contaminated sandy soil. The novelty was to assess the influence of five organic amendments differing in their composition and production process, i.e. solid fractions before and after biodigestion of pig manure, compost and compost pellets (produced from spent mushroom substrate, biogas digestate and straw), and greenwaste compost, on Cu availability, soil properties, nutrient supply, and plant growth. Organic amendments were incorporated into the soil at 2.3% and 5% soil w/w. Total soil Cu varied from 179 to 1520 mg kg−1, and 1 M NH4NO3-extractable soil Cu ranged from 4.7 to 104 mg kg−1 across the 25 plots. Spring barley (Hordeum vulgare cv. Ella) was cultivated in plots. Changes in physico-chemical soil properties, shoot DW yield, shoot ionome, and shoot Cu uptake depending on extractable soil Cu and the soil treatments are reported. Shoot Cu concentration varied from 45 ± 24 to 140 ± 193 mg kg DW−1 and generally increased with extractable soil Cu. Shoot DW yield, shoot Cu concentration, and shoot Cu uptake of barley plants did not significantly differ across the soil treatments in year 1. Based on soil and plant parameters, the effects of the compost and pig manure treatments were globally discriminated from those of the untreated, greenwaste compost and digested pig manure treatments. Compost and its pellets at the 5% addition rate promoted soil functions related to primary production, water purification, and soil fertility, and the soil quality index.},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{OConnor2023,

title = {Trees in temperate alley-cropping systems develop deep fine roots 

	5 years after plantation: What are the consequences on soil resources?},

author = {Claire O'Connor and Bernarhd Zeller and Caroline Choma and François Delbende and Ali Siah and Christophe Waterlot and Kasaina-Sitraka Andrianarisoa},

year  = {2023},

date = {2023-01-01},

journal = {Agriculture, Ecosystems & Environment},

volume = {345},

pages = {108339},

abstract = {Trees in alley-cropping systems (AC) were reported to develop deeper fine roots compared to forest trees and that they can modify soil water (SWC), mineral nitrogen (SMN) and organic matter (SOM) content. However, intercropping young trees has not been studied extensively. This study aimed to count tree fine roots abundance (TFRA) along a chronosequence of AC stands, to determine factors explaining its variability and to highlight its effects on soil resources. Seventeen alley-cropping plots ranging from 3 to 12 years old were chosen on farms in northern France. TFRA was measured by the core break method using soil samples collected at 0, 1, 3 and 10 m from a referent tree (a maple, a hybrid walnut or a hornbeam) down to 2 m depth. Before four years old, tree fine roots colonized the topsoil (0–30 cm) in rows and then mainly grew vertically from 4 to 6 years old, before laterally exploring deep soil layer (1–2 m) beyond this age. Stepwise analyses showed that stand age, tillage frequency and crop rotation duration explained 60 % of the variability of the sum of TFRA calculated for all soil layers at all distances from the tree row. The SWC was negatively correlated to TFRA suggesting that as trees get older, they dried the deep soil layer below the crop rooting zone and increased the soil depth able to store autumn and winter rainfall. No significant effect of either stand age or distance from tree rows was observed for SMN. It varied significantly with soil depth (R² = 0.3***) and was strongly correlated with soil nitrate content (R² = 0.97***). The soil ammonium content was significantly correlated with TFRA, suggesting that tree fine roots favor ammonium production or accumulation in soil, which may potentially allow for a reduction in the mineral nitrogen (N) mobility for leaching. Finally, we found a significantly high SOM correlated with TFRA only in topsoil on the tree rows at our oldest stands. No change of SOM was observed in the deep soil layer regardless of stand age. From this study, we concluded that fine root plasticity of intercropped trees occurred at early stage and may contribute with age to a better use of soil water, to managing the soil mineral N dynamic and to sequestrating carbon, at least in tree rows.},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{Paguet2023,

title = {Multivariate analysis of chemical and genetic diversity of wild Humulus 

	lupulus L. (hop) collected in situ in northern France},

author = {Anne-Sophie Paguet and Ali Siah and Gabriel Lefèvre and Sophie Moureu and Thierry Cadalen and Jennifer Samaillie and Franck Michels and Barbara Deracinois and Christophe Flahaut and Harmony Alves-Dos-Santos and Audrey Etienne-Debaecker and Caroline Rambaud and Sylvie Chollet and Roland Molinié and Jean-Xavier Fontaine and Christophe Waterlot and Marie-Laure Fauconnier and Sevser Sahpaz and Céline Rivière},

year  = {2023},

date = {2023-01-01},

journal = {Phytochemistry},

volume = {225},

pages = {113508},

abstract = {Highlights •50 wild hops from the North of France were genetically and chemically characterized. •Microsatellite-based study underlined high polymorphism among wild hop accessions. •Volatile compound analysis showed minor but original metabolites in wild hops. •Wild hops differ from commercial varieties in their high β-acid content and metabolomic diversity. •Multifactorial analysis suggested a potential terroir effect to explain this chemodiversity. The hop plant (Humulus lupulus L.) has been exploited for a long time for both its brewing and medicinal uses, due in particular to its specific chemical composition. These last years, hop cultivation that was in decline has been experiencing a renewal for several reasons, such as a craze for strongly hopped aromatic beers. In this context, the present work aims at investigating the genetic and chemical diversity of fifty wild hops collected from different locations in Northern France. These wild hops were compared to ten commercial varieties and three heirloom varieties cultivated in the same sampled geographical area. Genetic analysis relying on genome fingerprinting using 11 microsatellite markers showed a high level of diversity. A total of 56 alleles were determined with an average of 10.9 alleles per locus and assessed a significant population structure (mean pairwise FST = 0.29). Phytochemical characterization of hops was based on volatile compound analysis by HS-SPME GC-MS, quantification of the main prenylated phenolic compounds by UHPLC-UV as well as untargeted metabolomics by UHPLC-HRMS and revealed a high level of chemical diversity among the assessed wild accessions. In particular, analysis of volatile compounds revealed the presence of some minor but original compounds, such as aromadendrene, allo-aromadendrene, isoledene, β-guaiene, α-ylangene and β-pinene in some wild accessions; while analysis of phenolic compounds showed high content of β-acids in these wild accessions, up to 2.37% of colupulone. Genetic diversity of wild hops previously observed was hence supported by their chemical diversity. Sample soil analysis was also performed to get a pedological classification of these different collection sites. Results of the multivariate statistical analysis suggest that wild hops constitute a huge pool of chemical and genetic diversity of this species.},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{Vuillemin2023,

title = {Copper-uptake mediated by an ecofriendly zwitterionic ionic liquid: 

	A new challenge for a cleaner bioeconomy},

author = {Marie-E. Vuillemin and Christophe Waterlot and Anthony Verdin and Sylvain Laclef and Christine Cézard and David Lesur and Catherine Sarazin and Dominique Courcot and Caroline Hadad and Eric Husson and Albert-Nguyen Van-Nhien},

year  = {2023},

date = {2023-01-01},

journal = {Journal of Environmental Sciences},

volume = {130},

pages = {92-101},

abstract = {This study aims to investigate the ability of an imidazolium biobased Zwitterionic Ionic Liquids (ZILs) in enhancing the phytoavailability of copper from garden (G) and vineyard (V) soils using the model plant ryegrass. Uncontaminated and artificially contaminated CuSO4 soils, unamended and ZIL-amended soil modalities were designed. The copper/ZIL molar ratio (1/4) introduced was rationally established based on molecular modeling and on the maximal copper concentration in artificially contaminated soil. Higher accumulation of copper in the shoots was detected for the uncontaminated and copper contaminated ZIL amended V soils (18.9 and 23.3 mg.kg−1, respectively) contrary to G soils together with a ZIL concentration of around 3% w/w detected by LC-MS analyses. These data evidenced a Cu-accumulation improvement of 38 and 66% compared to non-amended V soils (13.6 and 13.9 mg.kg−1 respectively). ZIL would be mainly present under Cu(II)-ZIL4 complexes in the shoots. The impact on the chemical composition of shoot were also studied. The results show that depending on the soils modalitity, the presence of free copper and/or ZIL led to different chemical compositions in lignin and monomeric sugar contents. In the biorefinery context, performances of enzymatic hydrolysis of shoots were also related to the presence of both ZIL and copper under free or complex forms. Ecotoxicity assessment of the vineyard soil samples indicated that the quantity of copper and ZIL remaining in the soils had no significant toxicity. ZIL amendment in a copper-contaminated soil was demonstrated as being a promising way to promote the valorization of phytoremediation plants.},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{billmann:hal-04288865,

title = {Oral bioaccessibility of PTEs in soils: A review of data, influencing factors and application in human health risk assessment},

author = {Madeleine Billmann and Corinne Hulot and Benjamin Pauget and Rabia Badreddine and Arnaud Papin and Aurélie Pelfrêne},

url = {https://hal.science/hal-04288865},

doi = {10.1016/j.scitotenv.2023.165263},

year  = {2023},

date = {2023-10-01},

urldate = {2023-10-01},

journal = {Science of the Total Environment},

volume = {896},

pages = {165263},

publisher = {Elsevier},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{oconnor:hal-04288814,

title = {Trees in temperate alley-cropping systems develop deep fine roots 5 years after plantation: What are the consequences on soil resources?},

author = {Claire O'Connor and Bernarhd Zeller and Caroline Choma and François Delbende and Ali Siah and Christophe Waterlot and Kasaina Sitraka Andrianarisoa},

url = {https://hal.inrae.fr/hal-04288814},

doi = {10.1016/j.agee.2022.108339},

year  = {2023},

date = {2023-04-01},

urldate = {2023-04-01},

journal = {Agriculture, Ecosystems & Environment},

volume = {345},

pages = {108339},

publisher = {Elsevier},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{hechelski:hal-04633986,

title = {Influence of P-fertilizers on photosynthetic pigments and phytohormones of perennial ryegrass grown on co-contaminated soils},

author = {Marie Hechelski and Brice Louvel and Christophe Waterlot},

url = {https://hal.science/hal-04633986},

doi = {10.1007/s10725-023-01088-9},

year  = {2023},

date = {2023-11-01},

urldate = {2023-11-01},

journal = {Plant Growth Regulation},

volume = {102},

number = {3},

pages = {659-668},

publisher = {Springer Verlag},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{schnackenberg:hal-03583334,

title = {Effects of Inorganic and Organic Amendments on the Predicted Bioavailability of As, Cd, Pb and Zn in Kitchen Garden Soils},

author = {Ashley Schnackenberg and Géraldine Bidar and Valérie Bert and Patrice Cannavo and Sébastien Détriché and Francis Douay and René Guenon and Liliane Jean-Soro and Alice Kohli and Thierry Lebeau and Karen Perronnet and Laure Vidal-Beaudet and Christophe Waterlot and Aurélie Pelfrêne},

url = {https://hal.archives-ouvertes.fr/hal-03583334},

doi = {10.21926/aeer.2201004},

year  = {2022},

date = {2022-02-01},

urldate = {2022-02-01},

journal = {Advances in Environmental and Engineering Research},

volume = {3},

pages = {1 - 1},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{joimel:hal-03665415,

title = {One green roof type, one Technosol, one ecological community},

author = {Sophie Joimel and Baptiste Grard and Claire Chenu and Pénélope Cheval and Samuel Mondy and Mélanie Leli`evre and Apolline Auclerc and Laure Vieublé Gonod},

url = {https://hal.archives-ouvertes.fr/hal-03665415},

doi = {10.1016/j.ecoleng.2021.106475},

year  = {2022},

date = {2022-02-01},

urldate = {2022-02-01},

journal = {Ecological Engineering},

volume = {175},

pages = {106475},

publisher = {Elsevier},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{alvarado:hal-03671789,

title = {Amanita Section Phalloideae Species in the Mediterranean Basin: Destroying Angels Reviewed},

author = {Pablo Alvarado and Antonia Gasch-Illescas and Sylvie Morel and Magd Bou Daghekharrat and Gabriel Moreno and José Luis Manjón and Xavier Carteret and Jean-Michel Bellanger and Sylvie Rapior and Matteo Gelardi and Pierre-Arthur Moreau},

url = {https://hal.umontpellier.fr/hal-03671789},

doi = {10.3390/biology11050770},

year  = {2022},

date = {2022-01-01},

urldate = {2022-01-01},

journal = {Biology},

volume = {11},

number = {5},

pages = {770},

publisher = {MDPI },

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{kengnefotsing:hal-03738680,

title = {Relationships between Physico-Chemical Parameters and Taxonomic Structure of Benthic Macroinvertebrate Assemblages in Streams of West Cameroon},

author = {Joséphine Kengne Fotsing and Samuel Foto Menbohan and Albin Meyer and Alain Leprêtre and Philippe Usseglio-Polatera},

url = {https://hal.inrae.fr/hal-03738680},

doi = {10.3390/w14091490},

year  = {2022},

date = {2022-05-01},

urldate = {2022-05-01},

journal = {Water},

volume = {14},

number = {9},

pages = {1490},

publisher = {MDPI},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{leclercqdransart:hal-03767130,

title = {Comparison of the interest of four types of organic mulches to reclaim degraded areas (Part 2): Microbial activities and abiotic factors},

author = {Julie Leclercq-Dransart and Sylvain Demuynck and Fabien Grumiaux and Alain Leprêtre and Sébastien Lemière and Brice Louvel and Céline Pernin and Francis Douay},

url = {https://hal.archives-ouvertes.fr/hal-03767130},

doi = {10.1016/j.ecoleng.2022.106694},

year  = {2022},

date = {2022-09-01},

urldate = {2022-09-01},

journal = {Ecological Engineering},

volume = {182},

pages = {106694},

publisher = {Elsevier},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{guerin:hal-03771356,

title = {The phytoextraction power of Cichorium intybus L. on metal-contaminated soil: Focus on time- and cultivar-depending accumulation and distribution of cadmium, lead and zinc},

author = {Théo Guérin and Alina Ghinet and Christophe Waterlot},

url = {https://hal.archives-ouvertes.fr/hal-03771356},

doi = {10.1016/j.chemosphere.2021.132122},

year  = {2022},

date = {2022-01-01},

urldate = {2022-01-01},

journal = {Chemosphere},

volume = {287},

pages = {132122},

publisher = {Elsevier},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{girod:hal-03881273,

title = {A self-purifying microfluidic system for identifying drugs acting against adult schistosomes},

author = {Vincent Girod and Robin Houssier and Karin Sahmer and Marie-José Ghoris and Stéphanie Caby and Oleg Melnyk and Colette Dissous and Vincent Senez and Jérôme Vicogne},

url = {https://hal.archives-ouvertes.fr/hal-03881273},

doi = {10.1098/rsos.220648},

year  = {2022},

date = {2022-11-01},

urldate = {2022-11-01},

journal = {Royal Society Open Science},

volume = {9},

number = {11},

publisher = {The Royal Society},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{perez:hal-03873816,

title = {Methodological approaches for the structural, chemical, and microbial analysis of microbial biofilms developed on the surface of cementitious materials : Overview and future prospects},

author = {Cédric Perez and Christine Lors and Benjamin Erable},

url = {https://hal.archives-ouvertes.fr/hal-03873816},

doi = {10.1016/j.ibiod.2022.105485},

year  = {2022},

date = {2022-11-01},

urldate = {2022-11-01},

journal = {International Biodeterioration & Biodegradation},

volume = {175},

pages = {105485},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{luyckx:hal-03851601b,

title = {Impact of Silicon and Heavy Metals on Hemp (Cannabis sativa L.) Bast Fibres Properties: An Industrial and Agricultural Perspective},

author = {Marie Luyckx and Mathilde Blanquet and Arnaud Isenborghs and Gea Guerriero and Géraldine Bidar and Christophe Waterlot and Francis Douay and Stanley Lutts},

url = {https://hal.archives-ouvertes.fr/hal-03851601},

doi = {10.1007/s41742-022-00446-1},

year  = {2022},

date = {2022-10-01},

urldate = {2022-10-01},

journal = {International Journal of Environmental Research},

volume = {16},

number = {5},

pages = {82},

publisher = {Springer Verlag},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{KHALIFE2022101242,

title = {Molecular identification and azole susceptibility testing of Aspergillus section Fumigati isolated from soil samples in Lebanon},

author = {Sara Khalife and Agustin Resendiz-Sharpe and Katrien Lagrou and Emilie Fréalle},

url = {https://www.sciencedirect.com/science/article/pii/S1156523321001335},

doi = {https://doi.org/10.1016/j.mycmed.2021.101242},

issn = {1156-5233},

year  = {2022},

date = {2022-01-01},

urldate = {2022-01-01},

journal = {Journal of Medical Mycology},

volume = {32},

number = {2},

pages = {101242},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{Al-Lami2022,

title = {Phytomanagement of Pb/Zn/Cu tailings using biosolids-biochar or -humus 	combinations: Enhancement of bioenergy crop production, substrate 	functionality, and ecosystem services},

author = {Mariam-K. Al-Lami and Nadège Oustriere and Eva Gonzales and Joel-G. Burken},

year  = {2022},

date = {2022-01-01},

urldate = {2022-01-01},

journal = {Science of The Total Environment},

volume = {836},

pages = {155676},

abstract = {The extreme characteristics of mine tailings generally prohibit microbial processes and natural plant growth. Consequently, vast and numerous tailings sites remain barren for decades and highly susceptible to windblown dust and water erosion. Amendment-assisted phytostabilization is a cost-effective and ecologically productive approach to mitigate the potential transport of residual metals. Due to the contrasting and complementary characteristics of biosolids (BS) and biochar (BC), co-application might be more efficient than individually applied. Studies considering BS and BC co-application for multi-metal tailings revegetation are scarce. As tailings revegetation is a multidimensional issue, clearly notable demand exists for a study that provides a comprehensive understanding on the co-application impact on interrelated properties of physicochemical, biological, mineral nitrogen availability, metal immobilization, water-soil interactions, and impacts on plant cultivation and biomass production. This 8-month greenhouse study aimed at investigating the efficacy of co-application strategies targeting BS and carbon-rich amendments (BC or humic substances (HS)) to phytomanage a slightly alkaline Pb/Zn/Cu tailings with bioenergy crops (poplar, willow, and miscanthus). A complementary assessment linking revegetation effectiveness to ecosystem services (ES) provision was also included. Owing to their rich nutrient and organic matter contents, BS had the most pronounced influence on most of the measured properties including physicochemical, enzyme activities, NH4+-N and NO3−-N availability, immobilization of Zn, Cu, and Cd, and biomass production. Co-applying with BC exhibited efficient nutrient release and was more effective than BS alone in reducing metal bioavailability and uptake particularly Pb. Poplar and willow exhibited more superior phytostabilization efficiency compared to miscanthus which caused acidification-induced metal mobilization, yet BC and BS co-application was effective in ameliorating this effect. Enhancement of ES and substrate quality index mirrored the positive effect of amendment co-application and plant cultivation. Co-applying HS with BS resulted in improved nutrient cycling while BC enhanced water purification and contamination control services.},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{Al-Souki2022,

title = {Response of three Miscanthus x giganteus cultivars to toxic elements stress: Part 2, Comparison between two growing seasons},

author = {Karim-Suhail Al-Souki and Clarisse Liné and Jirí Moravec and Francis Douay and Bertrand Pourrut},

year  = {2022},

date = {2022-01-01},

urldate = {2022-01-01},

journal = {Plants},

volume = {11},

pages = {945},

abstract = {The positive impact on restoring soil functionality, decreasing toxic elements (TE) bioaccessibility, and enhancing soil physicochemical and biological parameters established a consensus on considering a Miscanthus  giganteus convenient species for phytomanaging wide TE contaminated areas. Nevertheless, information about the plant’s mode of reaction to elevated soil multi-TE concentrations is still scarce. For the sake of investigating the miscanthus response to stressful TE concentrations, an ex-situ pot experiment was initiated for 18 months, with three miscanthus cultivars referred to as B, U, and A planted in soils with gradient Cd, Pb, and Zn concentrations. A non-contaminated control soil was introduced as well, and plants were cultivated within. Results revealed that the long exposure to increasing soil TE concentrations caused the number of tillers per plant to decline and the TE concentrations in the leaves to boost progressively with the soil contamination. The photosynthetic pigments (chlorophyll a, b, and carotenoids) were negatively affected as well. However, the phenolic compounds, flavonoids, tannins, and anthocyanins, along with the antioxidant enzymatic activities of superoxide dismutase, ascorbate peroxidase, and glutathione reductase elevated progressively with the TE concentration and exposure duration. Conclusively, miscanthus plants demonstrated an intensified and synchronized antioxidative activity against the TE concentration.},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{Bagheri2022,

title = {Assessing plant uptake of organic contaminants by food crops tomato, 

	wheat, and corn through sap concentration factor},

author = {Majid Bagheri and Xiaolong He and Mariam-K. Al-Lami and Nadège Oustrière and Wenyan Liu and Matt-A. Limmer and Honglan Shi and Joel-G. Burken},

year  = {2022},

date = {2022-01-01},

journal = {International Journal of Phytoremediation},

abstract = {This study investigated uptake of two organic compounds including hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) and exogenous caffeine by tomato (Solanum lycopersicum L.), corn (Zea mays L.), and wheat (Triticum aestivum L.). The plants were grown in a growth chamber under recommended conditions and then were exposed to these compounds for 19 days. The uptake of the compounds was measured by sap concentration factor. The plant samples (stem transpiration stream) and solution in the exposure media were taken and analyzed by high performance liquid chromatography-tandem mass spectrometry. The plant stem samples were analyzed after a freeze-thaw centrifugation process. The average sap concentration factor for the RDX by tomato, wheat, and corn was 0.71, 0.67, and 0.65. The average sap concentration factor for the exogenous caffeine by tomato, wheat, and corn was 0.72, 0.50, and 0.34. These relatively high sap concentration factor values were expected as available predictive models offer high sap concentration factor values for moderately hydrophobic and hydrophilic compounds. The generated sap concentration factor values for the RDX and exogenous caffeine are important for improving the accuracy of previously developed machine learning models predicting the uptake and translocation of emerging contaminants. 

NOVELTY STATEMENT The uptake of two organic compounds (RDX and exogenous caffeine) was examined in three crop plants (corn, wheat, and tomato). There have not been any uptake studies on exogenous caffeine and also we do not have good data for the uptake of RDX by these three crop plants. The estimated sap concentration factor from these experiments fills the gap in the data for developing predictive models for uptake of emerging contaminants. A novel rapid freeze–thaw/centrifugation extraction method followed by high performance liquid chromatography-tandem mass spectrometry (HPLC-MS/MS) was used to analyze the samples.},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{Dufrenoy2022,

title = {Green synthesis of a new series of pyroglutamides targeting human 

	farnesyltransferase},

author = {Pierrick Dufrénoy and Marie Hechelski and Adam Daïch and Amaury Farce and Emmanuelle Lipka and Joëlle Dubois and Christophe Waterlot and Alina Ghinet},

year  = {2022},

date = {2022-01-01},

journal = {Sustainable Chemistry and Pharmacy},

volume = {30},

pages = {100894},

abstract = {Pyroglutamide derivatives have emerged as promising inhibitors of human farnesyltransferase (FTIs), an important target in oncology and also in rare diseases such as Hutchinson-Gilford progeria syndrome (HGPS). This report describes the chemical efforts to enrich the pyroglutamide series using greener and recyclable catalysts. The central reaction studied was an amidation between methyl pyroglutamates or vinylogues and amines. Ten catalysts have been tested in this amidation reaction: two classical Lewis acids (ZnCl2, ZrCl4), four impregnated montmorillonite K10 with ZnCl2 namely Cat1, Cat2, Cat3 and Cat4 (not activated, activated at 120 °C, 280 °C and 500 °C, respectively) and four montmorillonites K10 (commercial montmorillonite K10 not activated, activated at 120 °C, 280 °C and 500 °C). The most efficient catalyst was Cat4. The recyclability of Cat4 over five synthesis runs has been successfully tested. Twenty-six amides were synthesized and screened for their potential to inhibit human farnesyltransferase. Four points of chemical modulation around the pyrrolidine-2-one ring have been realized allowing to complete structure-activity relationships in these series. The study revealed several potent inhibitors targeting human farnesyltransferase in vitro with IC50 values in the submicromolar range and down to 30 nM. The docking of compounds in the active site of FTase highlighted that the S-isomers of pyroglutamides had good affinity. This study propels pyroglutamide derivatives as promising candidates for future functionality assays and in vivo evaluation.},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{Guerin2022,

title = {Removal of heavy metals from contaminated water using industrial 	wastes containing calcium and magnesium},

author = {Théo Guérin and Nadège Oustrière and David Bulteel and Damien Betrancourt and Alina Ghinet and Sandhya Malladi and Justice-G. Kaleo-Bioh and Amaury Blanc-Brude and Abraham Pappoe and Christophe Waterlot},

year  = {2022},

date = {2022-01-01},

urldate = {2022-01-01},

journal = {Journal of Cleaner Production},

volume = {337},

pages = {130472},

abstract = {Two industrial wastes (IW1 and IW2) were investigated as potential sorbents to retain cadmium and lead from contaminated water. The sorption experiments have been conducted through lab-engineered cartridge filtration system in order to get as close as possible to industrial processes. The effectiveness of IW1 and IW2 were compared to that of activated charcoal Norit® (AC), the best-known matrix for its excellent retention capacity. The sorption isotherms of metals on the three solid sorbents (IW1, IW2 and AC) were built, and then mathematically modelled. Free Gibbs energy (ΔG°) of the sorption processes as well as the equilibrium parameter (RL) have been calculated for each pollutant-sorbent couple. The study revealed that: i) for cadmium sorption, IW2 was much more effective than IW1 and especially than AC (18-fold higher in term of maximal sorption capacity); ii) if IW2 was slightly less effective than AC to retain lead, it can be still considered as an interesting sorbent due to its low cost; iii) the sorption of cadmium was as spontaneous on AC as on IW1, and almost half as much on IW2; iv) regarding lead retention, the sorption on the three sorbents was spontaneous; (v) the retention of cadmium and lead was mainly explained by precipitation since otavite, cerussite and hydrocerussite were identified and characterized by X-ray diffraction of used sorbents. The study showed that the industrial wastes studied stood out as new efficient materials with sorption power equal to or greater than the reference material AC. The prospect of a new generation of industrial wastes with lasting efficiency as contaminated water depollution agents comes at a key moment in the search for new perspectives in the circular economy.},

note = {ACL},

keywords = {ER2, ER4},

pubstate = {published},

tppubtype = {article}

}

@article{Mikajlo2022,

title = {Plant-soil nitrogen, carbon and phosphorus content after the addition 

	of biochar, bacterial inoculums and nitrogen fertilizer},

author = {Irina Mikajlo and Bertrand Pourrut and Brice Louvel and Jaroslav Hynst and Jaroslav Zahora},

year  = {2022},

date = {2022-01-01},

journal = {Journal of Plant Nutrition},

pages = {1-15},

abstract = {The use of biochar in combination with mineral or biological amendments to improve its influence on soil-plant properties has received growing attention. The changes of nitrogen, carbon and phosphorus content in Lactuca sativa var. capitata aboveground plant biomass and soil after the addition of beech wood biochar combined with the addition of bacterial inoculums (Bacofil and Novarefm) and nitrogen fertilizer have been studied using spectrophotometry methods. Pots were filled with the arable soil from the plots in the protection zone of water sources (Březová nad Svitavou, South Moravia, Czech Republic). Biochar with inoculums decreased plant growth in the first yield of Novaferm treatment and both yields of Bactofil treatment. Increased plant biomass growth was observed with Novaferm addition in the second yield. Total nitrogen increase has been obtained in the plant aboveground biomass and soil of the treatments amended with inoculums and nitrogen fertilizer. The decrease of phosphorus content has been observed in plant aboveground biomass in the biochar amended samples.},

note = {ACL},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}

@article{Vuillemin2022,

title = {Combining Phytoremediation and Biorefinery Strategies Assisted by 

	an Ecofriendly Zwitterionic Ionic Liquid: A New Challenge for a Cleaner 

	Bioeconomy},

author = {Marie Vuillemin and Christophe Waterlot and Anthony Verdin and Sylvain Laclef and Christine Cézard and David Lesur and Catherine Sarazin and Dominique Courcot and Caroline Hadad and Eric Husson and Albert Nguyen-van-Nhien},

year  = {2022},

date = {2022-01-01},

journal = {SSRN},

pages = {27pp},

abstract = {This study aims to investigate the ability of an imidazolium biobased Zwitterionic Ionic Liquids (ZILs) in enhancing the phytoextraction of copper from garden and vineyard soils using the model plant ryegrass (Lolium perenne L.). The copper/ZIL molar ratio (1/4) introduced was rationally established based on molecular modeling and on the maximal copper concentration in artificially contaminated soil. Higher accumulation of copper in the shoots was detected for the uncontaminated and copper contaminated ZIL amended soils (18.9 and 23.3 mg.kg-1, respectively) together with a similar ZIL concentration of around 3% w/w detected by LC-MS analyses. These data evidenced a phytoextraction improvement of 38 and 66% compared to non-amended soils. ZIL would be mainly present under Cu(II)-ZIL4 complexes in the shoots. However depending on the soil modalities, the presence of free copper and/or free ZIL led to different chemical compositions in lignin and monomeric sugar contents. In the biorefinery context, performances of enzymatic hydrolysis of shoots were related to the presence of both ZIL and copper under free or complex forms. Ecotoxicity of the different soils indicated that the quantity of copper and ZIL remaining in the soils had no significant toxicity. ZIL amendment in a copper-contaminated soil was demonstrated as being a promising way to promote the valorization of phytoremediation plants.},

note = {ACLO},

keywords = {ER4},

pubstate = {published},

tppubtype = {article}

}